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Nuclear Proteins (30):
  • Tumor Suppressor Protein p53
  • Silent Information Regulator Proteins, Saccharomyces cerevisiae
  • Retinoblastoma Protein
  • Proto-Oncogene Proteins c-fos
  • Protamines
  • Immunoglobulin J Recombination Signal Sequence-Binding Protein
  • Fanconi Anemia Complementation Group E Protein
  • NF-kappa B
  • Hepatocyte Nuclear Factors
  • Proliferating Cell Nuclear Antigen
  • Antigens, Nuclear
  • Proto-Oncogene Proteins c-rel
  • Retinoblastoma-Like Protein p130
  • Proto-Oncogene Proteins c-mdm2
  • BRCA2 Protein
  • Retinoblastoma-Like Protein p107
  • Proto-Oncogene Proteins c-myc
  • Oncogene Protein p55(v-myc)
  • ran GTP-Binding Protein
  • Karyopherins
  • Fanconi Anemia Complementation Group F Protein
  • Nuclear Matrix-Associated Proteins
  • Histones
  • Fanconi Anemia Complementation Group D2 Protein
  • Antennapedia Homeodomain Protein
  • CCAAT-Enhancer-Binding Proteins
  • Proto-Oncogene Proteins c-jun
  • Fanconi Anemia Complementation Group A Protein
  • Chromosomal Proteins, Non-Histone
  • BRCA1 Protein
Home > Amino Acids, Peptides, and Proteins > Proteins > Nuclear Proteins

Recent article

Nuclear Proteins

Developmental Cell (21)4 2011
ATXN1 protein family and CIC regulate extracellular matrix remodeling and lung alveolarization.
Yoontae Lee, John D Fryer, Hyojin Kang, Juan Crespo-Barreto, Aaron B Bowman, Yan Gao, Juliette J Kahle, Jeong Soo Hong, Farrah Kheradmand, Harry T Orr, Milton J Finegold and Huda Y Zoghbi
Abstract
We generated and characterized Atxn1L(-/-) and Atxn1(-/-); Atxn1L(-/-) mice. Atxn1L(-/-) mice have hydrocephalus, omphalocele, and lung alveolarization defects. These phenotypes are more penetrant and severe in Atxn1(-/-); Atxn1L(-/-) mice, suggesting that ATXN1 and ATXN1L are functionally redundan... | PMID: 22014525

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The American Journal of Surgical Pathology (35)9 2011
Molecular features of colorectal hyperplastic polyps and sessile serrated adenoma/polyps from Korea.
Kyoung-Mee Kim, Eui Jin Lee, Sangyun Ha, So Young Kang, Kee-Taek Jang, Cheol Keun Park, Jin Yong Kim, Young Ho Kim, Dong Kyung Chang and Robert Daniel Odze
Abstract
We conclude that HPs and SSA/Ps in Korean patients share some, but not all, clinical and molecular characteristics to those that occur in Americans. The data support the theory that the right and left colon are biologically different with regard to susceptibility to serrated cancer, and that anatomi... | PMID: 21836485

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Molecular Immunology (48)15-16 2011
NF-κB and BRG1 bind a distal regulatory element in the IL-3/GM-CSF locus.
Andrea L Wurster, Patricia Precht and Michael J Pazin
Abstract
We investigated gene regulation at the IL-3/GM-CSF gene cluster. We found BRG1, a SWI/SNF remodeling ATPase, bound a distal element, CNSa. BRG1 binding was strongest in differentiated, stimulated T helper cells, paralleling IL-3 and GM-CSF expression. Depletion of BRG1 reduced IL-3 and GM-CSF transc... | PMID: 21831442

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Nature (477)7362 2011
Protection of repetitive DNA borders from self-induced meiotic instability.
Gerben Vader, Hannah G Blitzblau, Mihoko A Tame, Jill E Falk, Lisa Curtin and Andreas Hochwagen
Abstract
We show that the edges of the rDNA array are exceptionally susceptible to meiotic DSBs, revealing an inherent heterogeneity in the rDNA array. We find that this localized DSB susceptibility necessitates a border-specific protection system consisting of the meiotic ATPase Pch2 and the origin recognit... | PMID: 21822291

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Biochemical and Biophysical Research Communications (412)2 2011
PARP1 inhibitors attenuate AKT phosphorylation via the upregulation of PHLPP1.
Shuai Wang, Huibo Wang, Ben C Davis, Jiyong Liang, Rutao Cui, Sai-Juan Chen and Zhi-Xiang Xu
Abstract
We show that two PARP1 inhibitors, PJ-34 and 3-AB, attenuate AKT phosphorylation at serine 473 (S473) independent of DNA repair impairment. These inhibitors decrease the AKT-associated phosphorylation of FOXO3A, enhance the nuclear retention of FOXO3A, and activate its transcriptional activity. We f... | PMID: 21821012

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Nature (476)7361 2011
A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation.
Vlad C Seitan, Bingtao Hao, Kikuë Tachibana-Konwalski, Thais Lavagnolli, Hegias Mira-Bontenbal, Karen E Brown, Grace Teng, Tom Carroll, Anna Terry, Katie Horan, Hendrik Marks, David J Adams, David G Schatz, Luis Aragon, Amanda G Fisher, Michael S Krangel, Kim Nasmyth and Matthias Merkenschlager
Abstract
We deleted the cohesin locus Rad21 in mouse thymocytes at a time in development when these cells stop cycling and rearrange their T-cell receptor (TCR) α locus (Tcra). Rad21-deficient thymocytes had a normal lifespan and retained the ability to differentiate, albeit with reduced efficiency. Loss of... | PMID: 21832993

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Molecular Cell (43)3 2011
Quantitative proteomics reveals the basis for the biochemical specificity of the cell-cycle machinery.
Felicia Walton Pagliuca, Mark O Collins, Agata Lichawska, Philip Zegerman, Jyoti S Choudhary and Jonathon Pines
Abstract
We performed a time-resolved analysis of the in vivo interactors of cyclins E1, A2, and B1 by quantitative mass spectrometry. This global analysis of context-dependent protein interactions reveals the temporal dynamics of cyclin function in which networks of cyclin-cdk interactions vary according to... | PMID: 21816347

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Nature Cell Biology (13)8 2011
esBAF safeguards Stat3 binding to maintain pluripotency.
Noa Novershtern and Jacob H Hanna
Abstract
How the unique chromatin configuration of embryonic stem cells (ESCs) integrates inputs from exogenous stimuli to maintain pluripotency remains largely unknown. The ESC-specific ATP-dependent chromatin-remodelling (esBAF) complex maintains the accessibility of the target sites of Sta... | PMID: 21808242

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Genes & Development (25)15 2011
Mechanism of CRL4(Cdt2), a PCNA-dependent E3 ubiquitin ligase.
Courtney G Havens and Johannes C Walter
Abstract
We discuss our current understanding of the molecular mechanism of substrate recognition by CRL4(Cdt2) and how this E3 ligase helps to maintain genome integrity.... | PMID: 21828267

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Genes & Development (25)15 2011
A snRNP's ordered path to maturity.
Saba Valadkhan
Abstract
The U5 snRNP (small ribonucleoprotein) contains several functionally crucial splicing factors that form an extensive interaction network both in the snRNP and within the spliceosome. In this issue of Genes & Development, Weber and colleagues (pp. 1601-1612) shed light on the dynamic... | PMID: 21828266

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Rinsho Ketsueki (52)7 2011
[Development of novel therapies targeting leukemia stem cells].
Atsushi A Hirao
Abstract
PMID: 21821979

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Developmental Cell (20)6 2011
Perinuclear cohibin complexes maintain replicative life span via roles at distinct silent chromatin domains.
Janet N Y Chan, Betty P K Poon, Jayesh Salvi, Jonathan B Olsen, Andrew Emili and Karim Mekhail
Abstract
We report here a role for Cohibin at telomeres and show that functions of the complex at chromosome ends and rDNA maintain replicative life span. Cohibin binds LEM/SUN domain-containing nuclear envelope proteins and telomere-associated factors. Disruption of Cohibin or the envelope proteins abrogate... | PMID: 21664583

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JAMA (305)22 2011
Cancer risks associated with germline mutations in MLH1, MSH2, and MSH6 genes in Lynch syndrome.
Valérie Bonadona, Bernard Bonaïti, Sylviane Olschwang, Sophie Grandjouan, Laetitia Huiart, Michel Longy, Rosine Guimbaud, Bruno Buecher, Yves-Jean Bignon, Olivier Caron, Chrystelle Colas, Catherine Noguès, Sophie Lejeune-Dumoulin, Laurence Olivier-Faivre, Florence Polycarpe-Osaer, Tan Dat Nguyen, Françoise Desseigne, Jean-Christophe Saurin, Pascaline Berthet, Dominique Leroux, Jacqueline Duffour, Sylvie Manouvrier, Thierry Frébourg, Hagay Sobol, Christine Lasset, Catherine Bonaïti-Pellié and French Cancer Genetics Network
Abstract
Providing accurate estimates of cancer risks is a major challenge in the clinical management of Lynch syndrome. To estimate the age-specific cumulative risks of developing various tumors using a large series of families with mutations of the MLH1, MSH2, and MSH6 genes... | PMID: 21642682

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Pigment Cell & Melanoma Research (24)3 2011
Regulation of NR4A nuclear receptor expression by oncogenic BRAF in melanoma cells.
Aaron G Smith, Wen Lim, Michael Pearen, George E O Muscat and Richard A Sturm
Abstract
We report here the regulation of members of the NR4A family of nuclear receptors by the BRAF-MEK-ERK cascade in melanoma cells. Expression profiling of melanoma cells in which both the NR4A1 and NR4A2 family members have been down-regulated by siRNA revealed alterations in genes associated with prol... | PMID: 21362156

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PLoS Genetics (7)6 2011
A functional variant in microRNA-146a promoter modulates its expression and confers disease risk for systemic lupus erythematosus.
Xiaobing Luo, Wanling Yang, Dong-Qing Ye, Huijuan Cui, Yan Zhang, Nattiya Hirankarn, Xiaoxia Qian, Yuanjia Tang, Yu Lung Lau, Niek de Vries, Paul Peter Tak, Betty P Tsao and Nan Shen
Abstract
We recently identified miR-146a as a negative regulator of the interferon pathway and linked the abnormal activation of this pathway to the underexpression of miR-146a in SLE patients. To explore why the expression of miR-146a is reduced in SLE patients, we conducted short parallel sequencing of pot... | PMID: 21738483

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PLoS Genetics (7)6 2011
How chromatin is remodelled during DNA repair of UV-induced DNA damage in Saccharomyces cerevisiae.
Shirong Yu, Yumin Teng, Raymond Waters and Simon H Reed
Abstract
We investigate how chromatin structure is modified following UV irradiation to facilitate DNA repair in yeast. Using a combination of chromatin immunoprecipitation to measure histone acetylation levels, histone acetylase occupancy in chromatin, MNase digestion, or restriction enzyme endonuclease acc... | PMID: 21698136

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Cancer Cell (19)5 2011
Reciprocal feedback regulation of PI3K and androgen receptor signaling in PTEN-deficient prostate cancer.
Brett S Carver, Caren Chapinski, John Wongvipat, Haley Hieronymus, Yu Chen, Sarat Chandarlapaty, Vivek K Arora, Carl Le, Jason Koutcher, Howard Scher, Peter T Scardino, Neal Rosen and Charles L Sawyers
Abstract
We find that AR transcriptional output is decreased in human and murine tumors with PTEN deletion and that PI3K pathway inhibition activates AR signaling by relieving feedback inhibition of HER kinases. Similarly, AR inhibition activates AKT signaling by reducing levels of the AKT phosphatase PHLPP.... | PMID: 21575859

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Cancer Cell (19)5 2011
ATMIN is required for maintenance of genomic stability and suppression of B cell lymphoma.
Joanna I Loizou, Rocio Sancho, Nnennaya Kanu, Daniel J Bolland, Fengtang Yang, Cristina Rada, Anne E Corcoran and Axel Behrens
Abstract
We show that mice lacking the ATM cofactor ATMIN in B cells (ATMIN(ΔB/ΔB)) have impaired ATM signaling and develop B cell lymphomas. Notably, ATMIN(ΔB/ΔB) cells exhibited defective peripheral V(D)J rearrangement and CSR, resulting in translocations involving the Igh and Igl loci, indicating that... | PMID: 21575860

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Neuron (70)2 2011
The expanding social network of ionotropic glutamate receptors: TARPs and other transmembrane auxiliary subunits.
Alexander C Jackson and Roger A Nicoll
Abstract
We think about iGluR function. Recently, a number of novel transmembrane proteins have been uncovered that may also serve as iGluR auxiliary proteins. Here we review pivotal developments in our understanding of the role of TARPs in AMPA receptor trafficking and gating, and provide an overview of how... | PMID: 21521608

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JAMA (305)15 2011
Use of whole-genome sequencing to diagnose a cryptic fusion oncogene.
John S Welch, Peter Westervelt, Li Ding, David E Larson, Jeffery M Klco, Shashikant Kulkarni, John Wallis, Ken Chen, Jacqueline E Payton, Robert S Fulton, Joelle Veizer, Heather Schmidt, Tammi L Vickery, Sharon Heath, Mark A Watson, Michael H Tomasson, Daniel C Link, Timothy A Graubert, John F DiPersio, Elaine R Mardis, Timothy J Ley and Richard K Wilson
Abstract
We were referred a difficult diagnostic case of acute promyelocytic leukemia with no pathogenic X-RARA fusion identified by routine metaphase cytogenetics or interphase fluorescence in situ hybridization (FISH). The case patient was enrolled in an institutional review board-approved protocol, with c... | PMID: 21505136

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Cell Cycle (10)8 2011
βTrCP regulates BMI1 protein turnover via ubiquitination and degradation.
Anagh A Sahasrabuddhe, Manjari Dimri, Prashant V Bommi and Goberdhan P Dimri
Abstract
We report that BMI1 contains a functional recognition motif for the F box protein βTrCP, which regulates ubiquitination and proteasome-mediated degradation of various proteins. We show that overexpression of wild-type βTrCP but not the ΔF mutant of it promotes BMI1 ubiquitination and degradation,... | PMID: 21430439

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Cell Cycle (10)8 2011
A breathtaking phenotype: unexpected roles of the DNA base damage response protein ASCIZ as a key regulator of early lung development.
Jörg Heierhorst, Ian Smyth and Sabine Jurado
Abstract
The ATM substrate Chk2-interacting Zn(2+)-finger protein (ASCIZ, also known as ATMIN and ZNF822) has previously been reported to be important for the repair of methylating and oxidative DNA damage, and it has also been proposed to regulate the stability and DNA damage-independent act... | PMID: 21415597

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Cell Cycle (10)8 2011
E2F1 promotes the recruitment of DNA repair factors to sites of DNA double-strand breaks.
Jie Chen, Feng Zhu, Regina L Weaks, Anup K Biswas, Ruifeng Guo, Yanjie Li and David G Johnson
Abstract
We demonstrate that the absence of E2F1 leads to spontaneous DNA breaks and impaired recovery following exposure to ionizing radiation. E2F1 deficiency results in defective NBS1 phosphorylation and foci formation in response to DSBs but does not affect NBS1 expression levels. Moreover, an increased... | PMID: 21512314

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Human Molecular Genetics (20)8 2011
Premature death and neurologic abnormalities in transgenic mice expressing a mutant huntingtin exon-2 fragment.
Andrew T N Tebbenkamp, Debbie Swing, Lino Tessarollo and David R Borchelt
Abstract
We generated transgenic mice expressing cDNA that encodes htt N118-82Q with the mouse prion promoter vector. In mice generated in this manner, we demonstrate robust inclusion pathology accompanied by early death and failure to gain weight. These phenotypes are the most robust abnormalities identifie... | PMID: 21307087

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Cell (144)5 2011
Mpk1 MAPK association with the Paf1 complex blocks Sen1-mediated premature transcription termination.
Ki-Young Kim and David E Levin
Abstract
We show here that Mpk1 additionally serves a function in transcription elongation that is also independent of its catalytic activity. This function is mediated by an interaction between Mpk1 and the Paf1 subunit of the Paf1C elongation complex. A mutation in Paf1 that blocks this interaction causes... | PMID: 21376235

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Nature Reviews: Immunology (11)3 2011
Emerging inflammasome effector mechanisms.
Mohamed Lamkanfi
Abstract
Caspase 1 activation by inflammasome complexes in response to pathogen-associated molecular patterns (PAMPs) and damage-associated molecular patterns (DAMPs) induces the maturation and secretion of the pro-inflammatory cytokines interleukin-1β (IL-1β) and IL-18. Recent reports have... | PMID: 21350580

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Cell (144)4 2011
Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains.
Hao Jiang, Abhijit Shukla, Xiaoling Wang, Wei-yi Chen, Bradley E Bernstein and Robert G Roeder
Abstract
We show that mammalian Dpy-30, a core subunit of the SET1/MLL histone methyltransferase complexes, modulates H3K4 methylation in vitro, and directly regulates chromosomal H3K4 trimethylation (H3K4me3) throughout the mammalian genome. Depletion of Dpy-30 does not affect ESC self-renewal, but signific... | PMID: 21335234

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Cell Cycle (10)4 2011
While p73 is essential, p63 is completely dispensable for the development of the central nervous system.
Lena Holembowski, Ramona Schulz, Flaminia Talos, Andreas Scheel, Sonja Wolff, Matthias Dobbelstein and Ute Moll
Abstract
We perform an extensive analysis of the developing central nervous system in global p63-/- mice and their wildtype littermates. Brain and spinal cord of embryos and newborn mice were assessed in vivo for neuroanatomy, histology, apoptosis, proliferation, stemness and differentiation, and in vitro fo... | PMID: 21293190

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Nature (470)7334 2011
Asymmetric cell divisions promote Notch-dependent epidermal differentiation.
Scott E Williams, Slobodan Beronja, H Amalia Pasolli and Elaine Fuchs
Abstract
We focus on developing mouse skin, where progenitor cells execute a switch from symmetric to predominantly asymmetric divisions concomitant with stratification. Using in vivo skin-specific lentiviral RNA interference, we investigate spindle orientation regulation and provide direct evidence that LGN... | PMID: 21331036

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Stem Cells and Development (20)2 2011
MicroRNA hsa-miR-138 inhibits adipogenic differentiation of human adipose tissue-derived mesenchymal stem cells through adenovirus EID-1.
Zhuo Yang, Chunjing Bian, Hong Zhou, Shan Huang, Shihua Wang, Lianming Liao and Robert Chunhua Zhao
Abstract
We reported that a human microRNA, hsa-miR-138, could inhibit the adipogenic differentiation of hAD-MSCs. Our results showed that miR-138 was significantly down-regulated during adipogenic differentiation. Overexpression of miR-138 in hAD-MSCs could effectively reduce lipid droplets accumulation, in... | PMID: 20486779

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Journal of Genetics and Genomics (38)2 2011
Distinct effects of nuclear membrane localization on gene transcription silencing in Drosophila S2 cells and germ cells.
Lu Sui and Yanhong Yang
Abstract
We have established a tethering system, in which the Gal4 DNA binding domain (DBD) of the Flag:Gal4 DBD:Ote▵LEM fusion protein physically interacts with the Gal4 binding sites upstream of bamP-gfp to artificially recruit the reporter gene gfp to the nuclear membrane. Our data demonstrated that the... | PMID: 21356524

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Molecular Cell (41)2 2011
Activation-induced cytidine deaminase induces reproducible DNA breaks at many non-Ig Loci in activated B cells.
Ori Staszewski, Richard E Baker, Anna J Ucher, Raygene Martier, Janet Stavnezer and Jeroen E J Guikema
Abstract
We asked if, during B cell activation, AID also induces DNA breaks at genes other than IgH genes. Using a nonbiased genome-wide approach, we have identified hundreds of reproducible, AID-dependent DSBs in mouse splenic B cells shortly after induction of CSR in culture. Most interestingly, AID induce... | PMID: 21255732

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JAMA (305)3 2011
Advances reshaping sickle cell therapy.
M J Friedrich
Abstract
PMID: 21245175

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Audio, Transactions of the IRE Professional Group on (12)9 2011
IL-17R signaling: new players get in on the Act1.
Michael J MJ May
Abstract
PMID: 21852777

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The American Journal of Surgical Pathology (35)1 2011
Study of parathyroid transcription factor Gcm2 expression in parathyroid lesions.
Daisuke Nonaka
Abstract
Glial cells missing 2 (Gcm2) is a master regulatory gene of parathyroid gland development, and it is exclusively expressed in the parathyroid gland. Diagnostic application of anti-Gcm2 antibody has not been reported yet. In this study, a total of 58 cases of parathyroid lesions including 40 adenomas... | PMID: 21164298

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DNA Repair (10)1 2011
UV-induced histone H2AX phosphorylation and DNA damage related proteins accumulate and persist in nucleotide excision repair-deficient XP-B cells.
Kyu-Seon Oh, Michael Bustin, Sharlyn J Mazur, Ettore Appella and Kenneth H Kraemer
Abstract
We found that uniform or localized UV treatment induced phosphorylation of the DNA damage related (DDR) proteins H2AX, ATM and NBS1 and co-localization of γ-H2AX with the DDR proteins p-ATM, p-NBS1, Rad51 and FANCD2 that persisted for about 6h in normal human fibroblasts. This post-UV phosphorylati... | PMID: 20947453

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DNA Repair (10)1 2011
UV-induced histone H2AX phosphorylation and DNA damage related proteins accumulate and persist in nucleotide excision repair-deficient XP-B cells.
Kyu-Seon Oh, Michael Bustin, Sharlyn J Mazur, Ettore Appella and Kenneth H Kraemer
Abstract
We found that uniform or localized UV treatment induced phosphorylation of the DNA damage related (DDR) proteins H2AX, ATM and NBS1 and co-localization of γ-H2AX with the DDR proteins p-ATM, p-NBS1, Rad51 and FANCD2 that persisted for about 6h in normal human fibroblasts. This post-UV phosphorylati... | PMID: 20947453

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DNA Repair (10)1 2011
UV-induced histone H2AX phosphorylation and DNA damage related proteins accumulate and persist in nucleotide excision repair-deficient XP-B cells.
Kyu-Seon Oh, Michael Bustin, Sharlyn J Mazur, Ettore Appella and Kenneth H Kraemer
Abstract
We found that uniform or localized UV treatment induced phosphorylation of the DNA damage related (DDR) proteins H2AX, ATM and NBS1 and co-localization of γ-H2AX with the DDR proteins p-ATM, p-NBS1, Rad51 and FANCD2 that persisted for about 6h in normal human fibroblasts. This post-UV phosphorylati... | PMID: 20947453

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Science Signaling (4)177 2011
IKKepsilon: a kinase at the intersection of signaling and membrane traffic.
Gwyn W Gould
Abstract
The ability to coordinate membrane trafficking events in space and time is of fundamental importance in biology. Polarized trafficking is essential for processes as diverse as cytokinesis, regulated endocytosis, cell motility, and morphogenesis, yet the interface between cellular sig... | PMID: 21673314

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Neural Development (6)1 2011
Sequential generation of olfactory bulb glutamatergic neurons by Neurog2-expressing precursor cells
Eleanor Winpenny, Mélanie Lebel-Potter, Maria E Fernandez, Monika S Brill, Magdalena Götz, Francois Guillemot and Olivier Raineteau
Abstract
We studied the temporal generation and diversity of Neurog2-positive precursor progeny using an inducible genetic fate mapping approach. We show that all subtypes of glutamatergic neurons derive from Neurog2 positive progenitors during development of the OB. Projection neurons, that is, mitral and t... | PMID: 21466690

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Aging (Albany, NY. Online) (3)1 2011
p53 governs telomere regulation feedback too, via TRF2.
Izumi Horikawa, Kaori Fujita and Curtis C Harris
Abstract
Our recent study shows that p53, a downstream effector of the telomere damage signaling, also functions upstream of the telomere‐capping protein complex by inhibiting one of its components, TRF2 (telomeric repeat binding factor 2). Since TRF2 inhibition leads to ATM activation, a novel positive fe... | PMID: 21266744

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International Review of Cell and Molecular Biology (288) 2011
SUMO and its role in human diseases.
Kevin D KD Sarge and Ok-Kyong OK Park-Sarge
Abstract
The covalent attachment of small ubiquition-like modifier (SUMO) polypeptides, or sumoylation, is an important regulator of the functional properties of many proteins. Among these are many proteins implicated in human diseases including cancer and Huntington's, Alzheimer's, and Parki... | PMID: 21482412

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The Korean Journal of Laboratory Medicine (31)1 2011
A case of therapy-related acute lymphoblastic leukemia with t(11;19)(q23;p13.3) and MLL/MLLT1 gene rearrangement.
Byong-Joon BJ Yoo, Myung-Hyun MH Nam, Hwa-Jung HJ Sung, Chae-Seung CS Lim, Chang-Kyu CK Lee, Yun-Jung YJ Cho, Kap-No KN Lee and Soo-Young SY Yoon
Abstract
We report a case of t-ALL with t(11;19)(q23;p13.3) and MLL-MLLT1 (alias ENL) gene rearrangement confirmed by cytogenetic analysis, multiplex reverse transcription-PCR (multiplex RT-PCR), and DNA sequencing in a patient who had undergone treatment for breast cancer. A 40-yr-old woman developed acute... | PMID: 21239865

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PLoS ONE (6)5 2011
Rtt107 phosphorylation promotes localisation to DNA double-stranded breaks (DSBs) and recombinational repair between sister chromatids.
Pranav Ullal, Felipe Vilella-Mitjana, Adam Jarmuz and Luis Aragón
Abstract
We show that Rtt107 is recruited to DSBs induced by the HO endonuclease. Rtt107 phosphorylation by Mec1 and its interaction with the Smc5-Smc6 complex are both required for Rtt107 loading to breaks, while Rtt107 regulators Slx4 and Rtt101 are not. We demonstrate that Rtt107 has an effect on the effi... | PMID: 21647453

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PLoS ONE (6)1 2011
Protein-protein interactions within late pre-40S ribosomes.
Melody G Campbell and Katrin Karbstein
Abstract
We have analyzed the protein-protein interactions between the seven assembly factors bound to late cytoplasmic pre-40S ribosomes using recombinant proteins in binding assays. Our data show that these factors form two modules: one comprising Enp1 and the export adaptor Ltv1 near the beak structure, a... | PMID: 21283762

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PLoS ONE (6)6 2011
An essential nuclear protein in trypanosomes is a component of mRNA transcription/export pathway.
Mariana Serpeloni, Carolina Borsoi Moraes, João Renato Carvalho Muniz, Maria Cristina Machado Motta, Augusto Savio Peixoto Ramos, Rafael Luis Kessler, Alexandre Haruo Inoue, Wanderson Duarte daRocha, Sueli Fumie Yamada-Ogatta, Stenio Perdigão Fragoso, Samuel Goldenberg, Lucio H Freitas-Junior and Andréa Rodrigues Avila
Abstract
I (RNA pol I) or Spliced Leader (SL) transcription, demonstrating participation particularly in nuclear mRNA metabolism in T. cruzi. The double knockout of the TcSub2 gene is lethal in T. cruzi, suggesting it has an essential function. Alternatively, RNA interference assays were performed in Trypano... | PMID: 21687672

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Nature (474)7350 2011
Role of YAP/TAZ in mechanotransduction.
Sirio Dupont, Leonardo Morsut, Mariaceleste Aragona, Elena Enzo, Stefano Giulitti, Michelangelo Cordenonsi, Francesca Zanconato, Jimmy Le Digabel, Mattia Forcato, Silvio Bicciato, Nicola Elvassore and Stefano Piccolo
Abstract
We report the identification of the Yorkie-homologues YAP (Yes-associated protein) and TAZ (transcriptional coactivator with PDZ-binding motif, also known as WWTR1) as nuclear relays of mechanical signals exerted by ECM rigidity and cell shape. This regulation requires Rho GTPase activity and tensio... | PMID: 21654799

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International Archives of Allergy and Immunology (155)s1 2011
Zinc Finger Protein, Multitype 1, Suppresses Human Th2 Development via Downregulation of IL-4
Noriko Kitamura, Akio Mori, Hideki Tatsumi, Soichi Nemoto, Takachika Hiroi and Osamu Kaminuma
Abstract
We here investigated the contribution of ZFPM1 to human Th1/Th2 differentiation. The cDNA of ZFPM1 was cloned and introduced into human cord blood CD4+ T cells by a lentiviral transduction system. Then, the expression of IL-4 and IFN-γ mRNA was determined by quantitative real-time R... | PMID: 21646796

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Molecular Carcinogenesis (50)1 2011
Expression analysis of proline rich 15 (Prr15) in mouse and human gastrointestinal tumors.
Dominique Meunier, Kalicharan Patra, Ron Smits, Andrea Hägebarth, Angela Lüttges, Rolf Jaussi, Matthew J Wieduwilt, Leticia Quintanilla-Fend, Heinz Himmelbauer, Riccardo Fodde and Reinald H Fundele
Abstract
We examined Prr15 expression by in situ hybridization (ISH) on mouse intestinal tumors caused by different gene mutations, and on human colorectal cancer (CRC) samples. Prr15/PRR15 expression was consistently observed in mouse gastrointestinal (GI) tumors caused by mutations in the Apc gene, as well... | PMID: 21061267

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Journal of Biological Chemistry (285)52 2010
Structural and biochemical studies on the chromo-barrel domain of male specific lethal 3 (MSL3) reveal a binding preference for mono- or dimethyllysine 20 on histone H4.
Stanley A Moore, Yurdagul Ferhatoglu, Yunhua Jia, Rami A Al-Jiab and Maxwell J Scott
Abstract
We have determined the human male specific lethal 3 (hMSL3) chromo-barrel domain structure by x-ray crystallography to a resolution of 2.5 Å (r = 0.226, R(free) = 0.270). hMSL3 contains a canonical methyllysine binding pocket made up of residues Tyr-31, Phe-56, Trp-59, and Trp-63. A six-residue in... | PMID: 20943666

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Biochemical and Biophysical Research Communications (403)3-4 2010
MDM2 promotes the proteasomal degradation of p73 through the interaction with Itch in HeLa cells.
Natsumi Kubo, Rintaro Okoshi, Kumiko Nakashima, Osamu Shimozato, Akira Nakagawara and Toshinori Ozaki
Abstract
We found that MDM2 indirectly induces the degradation of p73 through the interaction with Itch in HeLa cells. During adriamycin (ADR)-mediated apoptosis, p53 and p73 were induced to stabilize in association with a significant reduction of MDM2 and Itch, suggesting that, in addition to Itch, MDM2 cou... | PMID: 21093410

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Biochemical and Biophysical Research Communications (403)2 2010
Kaposi's sarcoma-associated herpesvirus-encoded LANA positively affects on ubiquitylation of p53.
Tohru Suzuki, Tomoyasu Isobe, Masatoshi Kitagawa and Keiji Ueda
Abstract
We established a series of stable transfectants expressing wild-type and three mutant LANA; amino terminus, carboxyl terminus and amino terminus plus DNA binding domain, as a new strategy to assess systematically the interactions and binding domains with cellular proteins. Using the system, we repor... | PMID: 21056547

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Immunity (33)6 2010
Transcription factor miz-1 is required to regulate interleukin-7 receptor signaling at early commitment stages of B cell differentiation.
Christian Kosan, Ingrid Saba, Maren Godmann, Stefanie Herold, Barbara Herkert, Martin Eilers and Tarik Möröy
Abstract
We report that mice lacking the POZ (Poxvirus and zinc finger) domain of the transcription factor Miz-1 (Zbtb17(ΔPOZ/ΔPOZ)) almost entirely lacked follicular B cells, as shown by the fact that their progenitors failed to activate the Jak-Stat5 pathway and to upregulate the antiapoptotic gene Bcl2... | PMID: 21167753

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EMBO Journal (29)24 2010
RNAi-based screening identifies the Mms22L-Nfkbil2 complex as a novel regulator of DNA replication in human cells.
Wojciech Piwko, Michael H Olma, Michael Held, Julien N Bianco, Patrick G A Pedrioli, Kay Hofmann, Philippe Pasero, Daniel W Gerlich and Matthias Peter
Abstract
We analysed the function of DCAFs and Cul4-linked proteins, and identified specific subsets required for progression through G1 and S phase. We discovered C6orf167/Mms22-like protein (Mms22L) as a putative human orthologue of budding yeast Mms22, which, together with cullin Rtt101, regulates genome... | PMID: 21113133

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Biochemical and Biophysical Research Communications (403)1 2010
p73 regulates maintenance of neural stem cell.
Massimiliano Agostini, Paola Tucci, Hailan Chen, Richard A Knight, Daniele Bano, Pierluigi Nicotera, Frank McKeon and Gerry Melino
Abstract
We show that TAp73 is expressed in neural stem cells (NSC) and its expression increases following their differentiation. NSC from p73 null mice have a reduced proliferative potential, together with reduced expression of members of the Sox-2 and Notch gene families known to be important for NSC proli... | PMID: 20977890

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The American Journal of Surgical Pathology (34)12 2010
Thyroid transcription factor-1 expression in breast carcinomas.
Judith Robens, Lynn Goldstein, Allen M Gown and Stuart J Schnitt
Abstract
We have recently encountered in our consultation practice 4 cases of invasive breast carcinoma (confirmed by clinical findings and other immunophenotypic features) that showed unequivocal tumor cell expression of TTF-1. However, the frequency with which TTF-1 expression is observed in breast carcino... | PMID: 21107096

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Discovery medicine (10)55 2010
Bromodomain coactivators in cancer, obesity, type 2 diabetes, and inflammation.
Gerald V Denis
Abstract
Double bromodomain proteins bind to acetylated lysines in histones, bringing associated histone modification and nucleosome remodeling activity to chromatin. The ability of bromodomain regulators to alter chromatin status and control gene expression has long been appreciated to be im... | PMID: 21189220

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Biochemical and Biophysical Research Communications (402)4 2010
The importance of location and orientation of male specific lethal complex binding sites of differing affinities on reporter gene dosage compensation in Drosophila.
Anja H Schiemann, Vikki M Weake, Fang Li, Corey Laverty, Esther J Belikoff and Maxwell J Scott
Abstract
We have investigated the effect of insertion of sites of differing affinities, either upstream or within the transcribed gene, on complex binding and transcription upregulation. Insertion of four copies of the 18D11 fragment upstream or at the 3' end of a reporter gene led to strong MSL complex bind... | PMID: 20977887

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Biochemical and Biophysical Research Communications (402)2 2010
ChREBP regulates Pdx-1 and other glucose-sensitive genes in pancreatic β-cells.
Gabriela da Silva Xavier, Gao Sun, Qingwen Qian, Guy A Rutter and Isabelle Leclerc
Abstract
We show here that ChREBP inactivation in clonal pancreatic MIN6 β-cells results in an increase in Pdx-1 expression at low glucose and to a small, but significant, increase in Ins2, GcK and MafA gene expression at high glucose concentrations. Conversely, adenovirus-mediated over-expression of ChREBP... | PMID: 20934404

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Journal of Biological Chemistry (285)45 2010
Identification of protein-protein and protein-ribosome interacting regions of the C-terminal tail of human mitochondrial inner membrane protein Oxa1L.
Md Emdadul Haque, Linda L Spremulli and Christopher J Fecko
Abstract
The mammalian mitochondrial inner membrane protein Oxa1L is involved in the insertion of a number of mitochondrial translation products into the inner membrane. During this process, the C-terminal tail of Oxa1L (Oxa1L-CTT) binds mitochondrial ribosomes and is believed to coordinate the synthesis and... | PMID: 20739282

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