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Genes (39):
  • Transgenes
  • Minor Histocompatibility Loci
  • Genes, Plant
  • Genes, Immunoglobulin
  • Genes, Essential
  • Genes, Developmental
  • Genes, RAG-1
  • Genes, Immediate-Early
  • Genes, Y-Linked
  • Minor Lymphocyte Stimulatory Loci
  • Genes, Reporter
  • Genes, Protozoan
  • Genes, Overlapping
  • Genes, Bacterial
  • Gene Components
  • Quantitative Trait Loci
  • Major Histocompatibility Complex
  • Genes, Viral
  • Genes, T-Cell Receptor
  • Genes, sry
  • Genes, Neoplasm
  • Pseudogenes
  • Genes, X-Linked
  • Genes, Mitochondrial
  • Genes, cdc
  • Alleles
  • Genes, Synthetic
  • Genes, Recessive
  • Genes, Helminth
  • Genes, Fungal
  • Genes, Regulator
  • Genes, Suppressor
  • Genes, MDR
  • Genes, Dominant
  • Genes, Archaeal
  • Multigene Family
  • Genes, Lethal
  • Genes, Insect
  • Genes, Duplicate
Home > Genetic Phenomena > Genetic Structures > Genome > Genome Components > Genes

Recent article

Genes

Audio, Transactions of the IRE Professional Group on (7)7 2011
A dynamical model reveals gene co-localizations in nucleus.
Jing J Kang, Bing B Xu, Ye Y Yao, Wei W Lin, Conor C Hennessy, Peter P Fraser and Jianfeng J Feng
Abstract
We built a dynamical model to test whether pure diffusion could account for the observed co-localization of genes within a defined subnuclear region. A simple standard Brownian motion model in two and three dimensions shows that preferential co-localization is possible for co-regulated genes without... | PMID: 21760760

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RNA (188)1 2011
An optimal weighted aggregated association test for identification of rare variants involved in common diseases.
Jae Hoon JH Sul, Buhm B Han, Dan D He and Eleazar E Eskin
Abstract
We present the rare variant weighted aggregate statistic (RWAS), a method that groups rare variants and computes a weighted sum of differences between case and control mutation counts. We show that our method outperforms the groupwise association test of Madsen and Browning in the disease-risk model... | PMID: 21368279

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Audio, Transactions of the IRE Professional Group on (6) 2011
How stands the Tree of Life a century and a half after The Origin?
Maureen A MA O'Malley and Eugene V EV Koonin
Abstract
We examine the Tree of Life (TOL) as an evolutionary hypothesis and a heuristic. The original TOL hypothesis has failed but a new "statistical TOL hypothesis" is promising. The TOL heuristic usefully organizes data without positing fundamental evolutionary truth. Reviewers: This article was reviewed... | PMID: 21714936

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Audio, Transactions of the IRE Professional Group on (6) 2011
Early evolution without a tree of life.
William F WF Martin
Abstract
ABSTRACT: Life is a chemical reaction. Three major transitions in early evolution are considered without recourse to a tree of life. The origin of prokaryotes required a steady supply of energy and electrons, probably in the form of molecular hydrogen stemming from serpentinization.... | PMID: 21714942

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Molecular BioSystems (6)12 2010
Protein glycosylation--an evolutionary crossroad between genes and environment.
Gordan Lauc and Vlatka Zoldoš
Abstract
The majority of molecular processes in higher organisms are performed by various proteins and are thus determined by genes that encode these proteins. However, a significant structural component of at least half of all cellular proteins is not a polypeptide encoded by a single gene,... | PMID: 20957246

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Audio, Transactions of the IRE Professional Group on (10)10 2010
Defining life.
Steven A SA Benner
Abstract
We then act as "anthropologists," studying what scientists do to determine which definition-theories of life they constructively hold as they design missions to seek non-terran life. We also look at how constructive beliefs about biosignatures change as observational data accumulate. And we consider... | PMID: 21162682

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Genetika (Moskva) (46)10 2010
[Location of genes in chromosomes: random or not?].
I A Zakharov
Abstract
The possibility is discussed that the order of genes in chromosomes is not random but determined by natural selection, i.e., is a selectively valuable character. Cases of long-term conservation of gene linkage or synteny in evolution are presented. Examples and possible mechanisms of nonrandom gene... | PMID: 21254548

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Obesity (18)9 2010
JNK deficiency enhances fatty acid utilization and diverts glucose from oxidation to glycogen storage in cultured myotubes.
Ravi Vijayvargia, Kara Mann, Harvey R Weiss, Henry J Pownall and Hong Ruan
Abstract
We hypothesized that the insulin-sensitive phenotype associated with Jnk deletion originates from loss of JNK function in skeletal muscle. Short hairpin RNA (shRNA)-mediated gene silencing was used to identify the functions of JNK subtypes in regulating energy metabolism and metabolic responses to e... | PMID: 20094041

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Journal of Dairy Science (93)9 2010
Association between the polymorphism of the goat stearoyl-CoA desaturase 1 (SCD1) gene and milk fatty acid composition in Murciano-Granadina goats.
A Zidi, V M Fernández-Cabanás, B Urrutia, J Carrizosa, O Polvillo, P González-Redondo, J Jordana, D Gallardo, M Amills and J M Serradilla
Abstract
Genetic variability of the caprine stearoyl-CoA desaturase 1 (SCD1) gene has been investigated by sequencing a 4.7-kb cDNA in 6 goats from the Murciano-Granadina and Malagueña breeds. Sequence alignment revealed the existence of one synonymous polymorphism at exon 5 (c.732C>T) and one nucleotide su... | PMID: 20723706

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Developmental Biology (344)2 2010
The Caenorhabditis elegans Ste20 kinase, GCK-3, is essential for postembryonic developmental timing and regulates meiotic chromosome segregation.
Adam P Kupinski, Thomas Müller-Reichert and Christian R Eckmann
Abstract
We report a comprehensive analysis of gck-3 function and demonstrate its requirement for several developmental processes independent of ion homeostasis, i.e., larval progression, vulva, and germ line formation. Consistent with a wide range of gck-3 function we find that endogenous GCK-3 is expressed... | PMID: 20595048

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Developmental Biology (344)2 2010
Expression of major guidance receptors is differentially regulated in spinal commissural neurons transfated by mammalian Barh genes.
Daisuke Kawauchi, Yuko Muroyama, Tatsuya Sato and Tetsuichiro Saito
Abstract
We examined the function of another Bar-class homeobox gene, Mbh2, and how Mbh1 and Mbh2 modulate expression of the receptors, leading to midline crossing of axons. Misexpression of Mbh1 and Mbh2 showed the same effects in the spinal cord. The competence of spinal dorsal cells to become commissural... | PMID: 20599893

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RNA (26)16 2010
Ontogenomic study of the relationship between number of gene splice variants and GO categorization.
Ari B AB Kahn, Barry R BR Zeeberg, Michael C MC Ryan, D Curtis DC Jamison, David M DM Rockoff, Yves Y Pommier and John N JN Weinstein
Abstract
Splice variation plays important roles in evolution and cancer. Different splice variants of a gene may be characteristic of particular cellular processes, subcellular locations or organs. Although several genomic projects have identified splice variants, there have been no large-scale computational... | PMID: 20616384

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Gene (462)1-2 2010
Evidence of alternative splicing of the chi2 chitinase gene from Metarhizium anisopliae.
Juliano Tomazzoni Boldo, Karina Bohrer do Amaral, Angela Junges, Paulo Marcos Pinto, Charley Christian Staats, Marilene Henning Vainstein and Augusto Schrank
Abstract
We detected the synthesis of two different proteins from the transcripts by two-dimensional Western blot and mass spectrometry analyses. This is the first reported occurrence of alternative splicing in M. anisopliae. Copyright 2010 Elsevier B.V. All rights reserved.... | PMID: 20406672

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Audio, Transactions of the IRE Professional Group on (9)4 2010
Transgenic mouse models of Parkinson's disease and Huntington's disease.
Stephen D SD Skaper and Pietro P Giusti
Abstract
Parkinson's disease (PD) is a chronic progressive neurodegenerative movement disorder characterized by a profound and selective loss of nigrostriatal dopaminergic neurons. Another neurodegenerative disorder, Huntington's disease (HD), is characterized by striking movement abnormalities and the loss... | PMID: 20522011

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Audio, Transactions of the IRE Professional Group on (9)4 2010
Insights from mouse models to understand neurodegeneration in Down syndrome.
Cristina C Fillat, Mara M Dierssen, María Martínez MM de Lagrán and Xavier X Altafaj
Abstract
Individuals with trisomy 21, also known as Down syndrome (DS), develop a clinical syndrome including almost identical neuropathological characteristics of Alzheimer's disease (AD) observed in non-DS individuals. The main difference is the early age of onset of AD pathology in individuals with DS, wi... | PMID: 20522013

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RNA (16)8 2010
SL2-like spliced leader RNAs in the basal nematode Prionchulus punctatus: New insight into the evolution of nematode SL2 RNAs.
Neale Harrison, Andreas Kalbfleisch, Bernadette Connolly, Jonathan Pettitt and Berndt Müller
Abstract
We have characterized SL RNAs from Prionchulus punctatus. Surprisingly, this revealed the presence of a set of SLs that show clear sequence similarity to the SL2 family of spliced leaders, which have previously only been found within the rhabditine group (which includes C. elegans). Expression of on... | PMID: 20566669

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Cellular and Molecular Life Sciences (67)15 2010
The genetic and evolutionary basis of colour variation in vertebrates.
Michael Hofreiter and Torsten Schöneberg
Abstract
We will first discuss the current knowledge about the genes and their functions underlying the biochemical pathways that determine pigmentation and then give examples where the mutations responsible for colour variation have been determined. Finally, we will discuss potential evolutionary causes for... | PMID: 20229234

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Nature Genetics (42)8 2010
Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.
Christopher T Johansen, Jian Wang, Matthew B Lanktree, Henian Cao, Adam D McIntyre, Matthew R Ban, Rebecca A Martins, Brooke A Kennedy, Reina G Hassell, Maartje E Visser, Stephen M Schwartz, Benjamin F Voight, Roberto Elosua, Veikko Salomaa, Christopher J O'Donnell, Geesje M Dallinga-Thie, Sonia S Anand, Salim Yusuf, Murray W Huff, Sekar Kathiresan and Robert A Hegele
Abstract
We show an accumulation of rare variants, or a mutation skew, in GWAS-identified genes in individuals with hypertriglyceridemia (HTG). Through GWAS, we identified common variants in APOA5, GCKR, LPL and APOB associated with HTG. Resequencing of these genes revealed a significant burden of 154 rare m... | PMID: 20657596

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Developmental Dynamics (239)8 2010
Identification of genes controlled by LMX1B in E13.5 mouse limbs.
Wendy X W Gu and Artur Kania
Abstract
We used DNA microarrays to compare the mRNAs in E13.5 mouse Lmx1b mutant and wild-type limbs. We report 14 genes that require Lmx1b for their normal expression in the dorsal limb or the restriction of their expression to the ventral limb.... | PMID: 20589901

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Human Genetics (128)2 2010
Genetic mapping of a novel hypotrichosis locus to chromosome 7p21.3-p22.3 in a Pakistani family and screening of the candidate genes.
Sulman Basit, Ghazanfar Ali, Naveed Wasif, Muhammad Ansar and Wasim Ahmad
Abstract
We have described a six-generation Pakistani consanguineous family with an autosomal recessive transmission of hereditary hypotrichosis. All the five affected individuals of the family showed complete absence of scalp hair and sparse eyebrows and eyelashes. They were born with complete absence of sc... | PMID: 20544222

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Human Genetics (128)2 2010
A locus for juvenile myoclonic epilepsy maps to 2q33-q36.
Rinki Ratnapriya, Joseph Vijai, Jayaram S Kadandale, Rajesh S Iyer, Kurupath Radhakrishnan and Anuranjan Anand
Abstract
We performed a whole genome linkage analysis in a three-generation south Indian family with multiple members affected with juvenile myoclonic epilepsy (JME). The maximum two-point LOD score obtained was 3.32 at recombination fraction (theta) = 0 for D2S2248. The highest multipoint score of 3.59 was... | PMID: 20467754

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Human Genetics (128)2 2010
Outcome of array CGH analysis for 255 subjects with intellectual disability and search for candidate genes using bioinformatics.
Y Qiao, C Harvard, C Tyson, X Liu, C Fawcett, P Pavlidis, J J A Holden, M E S Lewis and E Rajcan-Separovic
Abstract
We identified 47 previously unreported unique CNVs in 45/255 probands. We prioritized ID candidate genes using five bioinformatic gene prioritization web tools. Gene priority lists were created by comparing integral genes from each CNV from our ID cohort with sets of training genes specific either t... | PMID: 20512354

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Human Genetics (128)2 2010
Genetic determinants of autism in individuals with deletions of 18q.
Louise O'Donnell, Bridgette Soileau, Patricia Heard, Erika Carter, Courtney Sebold, Jon Gelfond, Daniel E Hale and Jannine D Cody
Abstract
We sought to identify genomic factors located on chromosome 18 as well as other loci that correlate with autistic behaviors. One hundred and five individuals with 18q- were assessed by high-resolution oligo aCGH and by parental ratings of behavior on the Gilliam Autism Rating Scale. Forty-five indiv... | PMID: 20499253

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Molecular and Cellular Biology (30)15 2010
Interplay between DNA methylation and transcription factor availability: implications for developmental activation of the mouse Myogenin gene.
Daniela Palacios, Dennis Summerbell, Peter W J Rigby and Joan Boyes
Abstract
We present mechanistic evidence that suggests DNA methylation contributes to this regulation by suppressing premature gene activation. Using the mouse Myogenin promoter as an example of the weak CpG island class of promoters, we find that it is initially methylated but becomes demethylated as develo... | PMID: 20498275

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Molecular and Cellular Biology (30)15 2010
RNA polymerase II C-terminal domain phosphorylation patterns in Caenorhabditis elegans operons, polycistronic gene clusters with only one promoter.
Alfonso Garrido-Lecca and Thomas Blumenthal
Abstract
We show by RNAPII chromatin immunoprecipitation (ChIP) that internal operon gene 5' ends do indeed lack Ser-5(P) peaks. In contrast, Ser-2(P) peaks occur at each mRNA 3' end, where the 3'-end formation machinery binds. These results provide additional support for the idea that the serine phosphoryla... | PMID: 20498277

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Molecular and Cellular Biology (30)15 2010
Drosophila von Hippel-Lindau tumor suppressor gene function in epithelial tubule morphogenesis.
Anita Hsouna, Gouthami Nallamothu, Nurgun Kose, Maria Guinea, Vincent Dammai and Tien Hsu
Abstract
We report the first genomic mutant phenotype of Drosophila melanogaster VHL (dVHL) in the epithelial tubule network, the trachea, and show that dVHL regulates branch migration and lumen formation via its endocytic function. The endocytic function regulates the surface level of the chemotactic signal... | PMID: 20516215

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Science (329)5988 2010
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.
Simon E Prochnik, James Umen, Aurora M Nedelcu, Armin Hallmann, Stephen M Miller, Ichiro Nishii, Patrick Ferris, Alan Kuo, Therese Mitros, Lillian K Fritz-Laylin, Uffe Hellsten, Jarrod Chapman, Oleg Simakov, Stefan A Rensing, Astrid Terry, Jasmyn Pangilinan, Vladimir Kapitonov, Jerzy Jurka, Asaf Salamov, Harris Shapiro, Jeremy Schmutz, Jane Grimwood, Erika Lindquist, Susan Lucas, Igor V Grigoriev, Rüdiger Schmitt, David Kirk and Daniel S Rokhsar
Abstract
We sequenced the 138-mega-base pair genome of V. carteri and compared its approximately 14,500 predicted proteins to those of its unicellular relative Chlamydomonas reinhardtii. Despite fundamental differences in organismal complexity and life history, the two species have similar protein-coding pot... | PMID: 20616280

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Science (329)5988 2010
Genetics. Volvox genome shows it doesn't take much to be multicellular.
Elizabeth Pennisi
Abstract
PMID: 20616240

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PNAS (107)28 2010
LIM-domain proteins, LIMD1, Ajuba, and WTIP are required for microRNA-mediated gene silencing.
Victoria James, Yining Zhang, Daniel E Foxler, Cornelia H de Moor, Yi Wen Kong, Thomas M Webb, Tim J Self, Yungfeng Feng, Dimitrios Lagos, Chia-Ying Chu, Tariq M Rana, Simon J Morley, Gregory D Longmore, Martin Bushell and Tyson V Sharp
Abstract
We reveal the identification of a family of three LIM domain-containing proteins, LIMD1, Ajuba and WTIP (Ajuba LIM proteins) as novel mammalian processing body (P-body) components, which highlight a novel mechanism of miRNA-mediated gene silencing. Furthermore, we reveal that LIMD1, Ajuba, and WTIP... | PMID: 20616046

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In Vitro Cellular & Developmental Biology - Animal (46)7 2010
Evaluation of suitable reference gene for real-time PCR in human umbilical cord mesenchymal stem cells with long-term in vitro expansion.
Youwei Wang, Zhibo Han, Shulin Yan, Aibin Mao, Bin Wang, He Ren, Ying Chi and Zhongchao Han
Abstract
We found that Ywhaz and Rpl13a, not beta-actin or Gapdh, were the most stably expressed of the internal control genes in different passages of human umbilical cord mesenchymal stem cells. Ywhaz and Rpl13a could be used as reference genes for relative gene quantification and normalization purposes in... | PMID: 20440577

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DNA and Cell Biology (29)7 2010
Association of selected variants in genes involved in cell cycle and apoptosis with bladder cancer risk in North Indian population.
Ruchika Gangwar and Rama Devi Mittal
Abstract
Perturbations in the cell cycle and apoptotic genes have been implicated in human malignancies. Cell cycle (MDM2 and Cyclin D1) and apoptotic (Fas) genes that are differentially expressed in urinary bladder cancer (UBC) were investigated with the susceptibility to UBC in northern India. A total of 2... | PMID: 20380574

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Brain (133)Pt 7 2010
The age of single-gene neurological disorders is not dead.
Patrick F Chinnery
Abstract
PMID: 20584944

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American Journal of Physiology - Regulatory, Integrative and Comparative Physiology (299)1 2010
Stress activation of IL-6 neurons in the hypothalamus.
Ryan Jankord, Rong Zhang, Jonathan N Flak, Matia B Solomon, Jennifer Albertz and James P Herman
Abstract
An emerging literature attests to the ability of psychological stress to alter the inflammatory cytokine environment of the body. While the ability of stress to cause cytokine release is well established, the neural pathways involved in this control have yet to be identified. This study tests the hy... | PMID: 20427720

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Journal of Animal Science (88)7 2010
Epistatic analysis of carcass characteristics in pigs reveals genomic interactions between quantitative trait loci attributable to additive and dominance genetic effects.
C Duthie, G Simm, A Doeschl-Wilson, E Kalm, P W Knap and R Roehe
Abstract
The present study focused on the identification of epistatic QTL pairs for body composition traits (carcass cut, lean tissue, and fat tissue weights) measured at slaughter weight (140 kg of BW) in a 3-generation full-sib population developed by crossing Pietrain sires with a crossbre... | PMID: 20228239

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Journal of Animal Science (88)7 2010
The insulin-like growth factor 2 (IGF2) gene intron3-g.3072G>A polymorphism is not the only Sus scrofa chromosome 2p mutation affecting meat production and carcass traits in pigs: evidence from the effects of a cathepsin D (CTSD) gene polymorphism.
L Fontanesi, C Speroni, L Buttazzoni, E Scotti, S Dall'Olio, L Nanni Costa, R Davoli and V Russo
Abstract
We assigned, by linkage mapping, the CTSD gene, a lysosomal proteinase, for which we previously identified an SNP in the 3'-untranslated region (AM933484, g.70G>A). We have already shown strong effects of this CTSD mutation on several production traits in Italian Large White pigs, suggesting a possi... | PMID: 20382874

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Biology Letters (6)3 2010
Evolution of ultraviolet vision in shorebirds (Charadriiformes).
Anders Odeen, Olle Håstad and Per Alström
Abstract
We have sequenced the SWS1 opsin gene in a broader sample of species. We confirm that cysteine in the key amino acid position 90, characteristic of the UVS class, has been conserved throughout gull evolution but also that the terns Anous minutus, A. tenuirostris and Gygis alba, and the skimmer Rynch... | PMID: 20015861

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Audio, Transactions of the IRE Professional Group on (7)47 2010
Computational limits to binary genes.
Nicolae Radu NR Zabet and Dominique F DF Chu
Abstract
We analyse the trade-off between the speed with which a gene can propagate information, the noise of its output and its metabolic cost. Our main finding is that for any given level of metabolic cost there is an optimal trade-off between noise and processing speed. Any system with a non-vanishing lea... | PMID: 20007173

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Nature (465)7298 2010
Mouse megascience.
Author(s) unavailable
Abstract
PMID: 20520665

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Nature Chemical Biology (6)6 2010
Biosynthesis: is it time to go retro?
Brian O Bachmann
Abstract
PMID: 20479744

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Current Gene Therapy (10)3 2010
Baculovirus as a gene delivery vector for cartilage and bone tissue engineering.
Chin-Yu Lin, Chia-Hsin Lu, Wen-Yi Luo, Yu-Han Chang, Li-Yu Sung, Hsin-Yi Chiu and Yu-Chen Hu
Abstract
Baculovirus is an effective vector for gene delivery into various mammalian cells, including chondrocytes and mesenchymal stem cells, and has been employed for diverse applications. By gene delivery and expression of the growth factor, recombinant baculovirus has been shown to modula... | PMID: 20426760

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Current Gene Therapy (10)3 2010
Baculovirus gene delivery: a flexible assay development tool.
Thomas A Kost, J Patrick Condreay and Robert S Ames
Abstract
Modern drug discovery programs utilize a wide variety of technologies to aid in identification of potential drug targets, and progress them through the often long and winding path of finding novel drug-like molecules. Recombinant cell-based assays are an important tool in the drug di... | PMID: 20392201

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RNA (16)6 2010
Modular domains of the Dicistroviridae intergenic internal ribosome entry site.
Christopher J Jang and Eric Jan
Abstract
We report on the modularity of the IGR IRESs and show that the ribosome-binding domain and the tRNA anticodon mimicry domain are functionally interchangeable between the Type I and the Type II IGR IRESs. Using structural probing, ribosome-binding assays, and ribosome positioning analysis by toeprint... | PMID: 20423979

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Journal of Human Genetics (55)6 2010
Replication of genetic association studies in asthma and related phenotypes.
Siizkhuu Undarmaa, Yoichi Mashimo, Satoshi Hattori, Naoki Shimojo, Kimie Fujita, Akihiko Miyatake, Satoru Doi, Yoichi Kohno, Yoshitaka Okamoto, Tomomitsu Hirota, Mayumi Tamari, Akira Hata and Yoichi Suzuki
Abstract
We investigated the reproducibility of the 23 most promising asthma and asthma-related candidate genes in a moderately sized sample from the Japanese population. We compared the frequency of 33 polymorphisms in unrelated cases and controls and tested for their association with asthma, atopy and seru... | PMID: 20395963

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Analytical Biochemistry (401)1 2010
Selection of reference genes for quantitative real-time reverse transcription-polymerase chain reaction in concanavalin A-induced hepatitis model.
Guojun Shi, Zhijian Zhang, Dechun Feng, Yan Xu, Yan Lu, Jiqiu Wang, Jingjing Jiang, Zhiguo Zhang, Xiaoying Li and Guang Ning
Abstract
We got inconsistent results with previous reports determining IkappaBalpha and C/EBPbeta mRNA expression levels. The results indicate the necessity for stability analysis of candidate reference genes in the CIH model. geNorm, NormFinder, and BestKeeper software analysis indicates that ACTB is the mo... | PMID: 20153286

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Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

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Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

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Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

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Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

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Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

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Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

Large_pdficon_selected PDF is available here.
Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

Large_pdficon_selected PDF is available here.
Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

Large_pdficon_selected PDF is available here.
Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

Large_pdficon_selected PDF is available here.
Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

Large_pdficon_selected PDF is available here.
Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

Large_pdficon_selected PDF is available here.
Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

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Biometrics (66)2 2010
Linear mixed model selection for false discovery rate control in microarray data analysis.
Cumhur Yusuf Demirkale, Dan Nettleton and Tapabrata Maiti
Abstract
We propose a new method that combines results from the fit of full and selected linear mixed models to identify differentially expressed genes and provide FDR control at target levels when the true underlying random effects structure varies across genes.... | PMID: 19522873

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Hereditas (147)3 2010
FISH mapping of six genes responsible for development of the nervous and skeletal systems on donkey (Equus asinus) chromosomes.
Monika Bugno-Poniewierska, Klaudia Pawlina, Aneta Dardzińska, Tomasz Zabek, Ewa Słota and Jolanta Klukowka-Rötzler
Abstract
The results obtained in the present study made it possible to place selected markers responsible for development of the nervous and skeletal systems on the physical map of the donkey genome. Fluorescence in situ hybridization (FISH) was used to localize genes such as GDF5 (15q13), FRZB (4q23.1), TWI... | PMID: 20626768

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Nucleic Acids Research (38)11 2010
GOing Bayesian: model-based gene set analysis of genome-scale data.
Sebastian Bauer, Julien Gagneur and Peter N Robinson
Abstract
We present model-based gene set analysis (MGSA) that analyzes all categories at once by embedding them in a Bayesian network, in which gene response is modeled as a function of the activation of biological categories. Probabilistic inference is used to identify the active categories. The Bayesian mo... | PMID: 20172960

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Journal of Controlled Release (144)1 2010
Thiolated trimethyl chitosan nanocomplexes as gene carriers with high in vitro and in vivo transfection efficiency.
Xin Zhao, Lichen Yin, Jieying Ding, Cui Tang, Shaohua Gu, Chunhua Yin and Yumin Mao
Abstract
Trimethyl chitosan-cysteine conjugate (TMC-Cys) was evaluated as non-viral gene carriers to combine the advantages of TMC and thiolated chitosan. TMC-Cys with various molecular weights (30, 100, and 200 kDa) and quaternization degrees (15 and 30%) was allowed to form polyelectrolyte nanocomplexes wi... | PMID: 20093155

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