Abstract
We argue that the results are limited in scope to just a handful of woody species in one part of the state and are confounded by methodological errors....
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PMID: 21998369
PDF is available here.
Abstract
I contend that there is no support for a general downhill shift after correcting for this geographic bias....
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PMID: 21998370
PDF is available here.
Abstract
Algae are a large group of aquatic, typically photosynthetic, eukaryotes that include species from very diverse phylogenetic lineages, from those similar to land plants to those related to protist parasites. The recent sequencing of several algal genomes has provided insights into th...
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PMID: 21803865
PDF is available here.
Abstract
Spontaneous isoaspartyl formation from aspartyl dehydration or asparaginyl deamidation is a major source of modifications in protein structures. In cells, these conformational changes could be reverted by the protein L-isoaspartyl methyltransferase (PIMT) repair enzyme that converts...
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PMID: 21586350
PDF is available here.
Abstract
Salinity in agricultural land is a major problem worldwide, placing a severe constraint on crop growth and productivity in many regions, and increased salinization of arable land is expected to have devastating global effects. Though plants vary in their sensitivity to salt stress, h...
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PMID: 21440686
PDF is available here.
Abstract
In common with other aerobic organisms, plants are exposed to reactive oxygen species resulting in formation of post-translational modifications related to protein oxidoreduction (redox PTMs) that may inflict oxidative protein damage. Accumulating evidence also underscores the import...
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PMID: 21406256
PDF is available here.
Abstract
The workhorse for proteomics in non-model plants is classical two-dimensional electrophoresis, a combination of iso-electric focusing and SDS-PAGE. However, membrane proteins with multiple membrane spanning domains are hardly detected on classical 2-DE gels because of their low abund...
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PMID: 21354347
PDF is available here.
Abstract
Plant acclimation to stress is associated with profound changes in proteome composition. Since proteins are directly involved in plant stress response, proteomics studies can significantly contribute to unravel the possible relationships between protein abundance and plant stress acc...
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PMID: 21329772
PDF is available here.
Abstract
Humans are notorious for disturbing terrestrial ecosystems worldwide, especially those that are in close proximity to urban areas. This disturbance has involved the accumulation of various types of chemical pollutants, of either agricultural or industrial origins, in both soil and wa...
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PMID: 21977500
PDF is available here.
Abstract
We generated transgenic plants expressing a redox-regulated GFP reporter. Results show that initially, Sclerotinia (via OA) generates a reducing environment in host cells that suppress host defense responses including the oxidative burst and callose deposition, akin to compatible biotrophic pathogen...
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PMID: 21738471
PDF is available here.
Abstract
The epigenomic regulation of chromatin structure and genome stability is essential for the interpretation of genetic information and ultimately the determination of phenotype. High-resolution maps of plant epigenomes have been obtained through a combination of chromatin technologies...
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PMID: 21438682
PDF is available here.
Abstract
Radiotherapy, frequently used for treatment of solid tumors, carries two main obstacles including acquired radioresistance in cancer cells during radiotherapy and normal tissue injury. Phenylpropanoids, which are naturally occurring phytochemicals found in plants, have been identified as potential ra...
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PMID: 21483230
PDF is available here.
Abstract
Polysaccharide-rich plant cell walls are important biomaterials that underpin plant growth, are major repositories for photosynthetically accumulated carbon, and, in addition, impact greatly on the human use of plants. Land plant cell walls contain in the region of a dozen major poly...
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PMID: 21199879
PDF is available here.
Abstract
We applied a standardized approach across 20 farms to obtain well-resolved food webs to characterize network structure and explore how modularity changes in response to management (organic and conventional). All networks showed significantly higher modularity than random networks. Farm management ha...
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PMID: 21563581
PDF is available here.
Abstract
Eating five servings of fruits and vegetables per day! This is what is highly recommended and heavily advertised nowadays to the general public to stay fit and healthy! Drinking green tea on a regular basis, eating chocolate from time to time, as well as savoring a couple of glasses...
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PMID: 21226137
PDF is available here.
Abstract
I explain why chemists should be aware of the essentials of plant naming, and describe some easy quality checks that can be performed to avoid errors being perpetuated....
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PMID: 21057691
PDF is available here.
Abstract
In the otherwise excellent special issue of Trends in Ecology and Evolution on long-term ecological research (TREE 25(10), 2010), none of the contributors mentioned the importance of natural history collections (NHCs) as sources of data that can strongly complement past and ongoing survey data. Where...
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PMID: 21255862
PDF is available here.
Abstract
We compiled geographic range data for 180 bird, 119 butterfly, 204 tree and 219 understorey plant species sampled along a gradient of habitat modification ranging from near-primary forest through young secondary forest and agroforestry systems to annual crops in the southwestern lowlands of Cameroon...
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PMID: 21298054
PDF is available here.
Abstract
We focused our attention on the hybrid and plant pathogen Verticillium longisporum, the causal agent of the Verticillium wilt disease in crucifer crops. In order to address questions related to the evolutionary origin of V. longisporum, we used phylogenetic analyses of seven nuclear loci and a datas...
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PMID: 21455321
PDF is available here.
Abstract
We also present methods for the determination of compositions of constituent fatty acids, distribution of fatty acids between sn-1 and sn-2 positions, and determination of contents of individual lipid classes by gas-liquid chromatography. These methods are applicable to isolated chloroplasts or some...
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PMID: 20960124
PDF is available here.
Abstract
We describe the methods for assaying photoinhibition and heat inhibition of photosystem II in higher plant materials....
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PMID: 20960132
PDF is available here.
Abstract
Ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) is a multifunctional enzyme that catalyzes the fixation of CO2 and O2 in photosynthesis and photorespiration, respectively. As the rate-limiting step in photosynthesis, improving the catalytic properties of Rubisco has long been viewed as a v...
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PMID: 20960141
PDF is available here.
Abstract
We describe techniques for measuring the amount and activity of Rubisco in higher plants. To accommodate a range of experimental capabilities, we describe basic radioisotopic methods as well as non-radioactive techniques. The required calculations are included. We discuss problems that commonly aris...
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PMID: 20960142
PDF is available here.
Abstract
Methods to isolate and purify 6- and 5-Chl D1/D2/Cyt b559 photosystem II (PSII) reaction center (RC) complexes from plants are presented, and the advantages and disadvantages of each procedure are discussed. One of the simpler 6-Chl procedures and a procedure for isolating 5-Chl complexes are descri...
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PMID: 20960118
PDF is available here.
Abstract
We show that with these findings, new directions for future investigations are emerging, particularly via the increasing availability of diverse metagenomic and metatranscriptomic data sets....
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PMID: 21093095
PDF is available here.
Abstract
The prospect of assessing the environmental distribution of chemicals directly from their molecular information was analyzed. Multimedia chemical partitioning of 455 chemicals, expressed in dimensionless compartmental mass ratios, was predicted by SimpleBox 3, a Level III Fugacity model, together wi...
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PMID: 21059471
PDF is available here.
Abstract
We have entered an era of systems modeling, experimental testing, and refinement. This approach, coupled with advances from the genetic and biochemical analyses of clock function, is accelerating our progress towards a comprehensive understanding of the plant circadian clock network.
Copyright © 20...
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PMID: 20889330
PDF is available here.
Abstract
To characterize features of diagnosis, treatment, and outcome in horses with foreign bodies, exclusive of enteric, inhaled, and foot-penetrating foreign bodies.
Retrospective case series.
37 horses with foreign bodies.
The incidence of equine foreign bodies from 1990 through 2005 was determined by r...
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PMID: 21073389
PDF is available here.
Abstract
Employing the utility of the native chemical ligation, site-specific attachment of an ultrastable perylene dye to a derivative of the major light-harvesting complex (LHCII) was demonstrated. Biochemical analysis of the conjugate indicated that the structure and function of LHCII remain largely unaff...
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PMID: 20820669
PDF is available here.
Abstract
The rhizosphere is the soil-plant root interphase and in practice consists of the soil adhering to the root besides the loose soil surrounding it. Plant growth-promoting rhizobacteria (PGPR) are potential agents for the biological control of plant pathogens. A biocontrol strain should be able to pro...
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PMID: 20635120
PDF is available here.
Abstract
Analytic expressions for maximum chemical concentration attained in plants, and time this takes for uptake from surrounding soil were derived from a simple two-compartment soil/water-plant model. To illustrate, for the antibiotic norflxacin undergoing first order loss in the soil/water phase with a...
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PMID: 21069277
PDF is available here.
Abstract
We were able to examine the impacts of increased plant production, independent of changes in plant composition and/or diversity, on the trophic structure, composition, and diversity of the entire arthropod community. If arthropod species richness increased with greater plant production, we predicted...
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PMID: 21141191
PDF is available here.
Abstract
We quantified the extent to which these attributes affect leaf trait values at a given resource supply level, using measured plant traits from 105 different species (254 observations) distributed across 50 sites in mesic to wet plant communities in The Netherlands. For each site, soil total N, soil...
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PMID: 21141183
PDF is available here.
Abstract
We utilize an experimental framework based on competition theory to test whether plants partition resources via classical niche differentiation or via plasticity in resource use. We explore two alternatives: niche preemption, in which individuals respond to a superior competitor by switching to an a...
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PMID: 21141186
PDF is available here.
Abstract
We identify the correspondence between multistate capture-recapture models and Markov models of habitat dynamics. We exploit this correspondence by fitting and comparing competing models of different ecological covariates affecting habitat transition probabilities in Florida scrub and flatwoods, a h...
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PMID: 21141196
PDF is available here.
Abstract
We adapted a molecular method, fluorescent fragment length polymorphism, to identify root fragments and determine species root distributions in two grasslands in Yellowstone National Park (YNP). Aboveground biomass was measured, and soil cores (2 cm in diameter) were collected to depths of 40 cm and...
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PMID: 21141181
PDF is available here.
Abstract
We surveyed the literature for empirical studies of coexistence at a local scale (i.e., species found living together in one place) to determine whether these studies satisfied the invasibility criterion. In our survey, only seven of 323 studies that drew conclusions about species coexistence evalua...
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PMID: 21141177
PDF is available here.
Abstract
We have conducted a warming and clipping experiment since November 1999 in a tallgrass prairie of the Great Plains, USA. Infrared heaters were used to elevate soil temperature by an average of 1.96 degrees C at a depth of 2.5 cm from 2000 to 2008. Yearly biomass clipping mimicked hay or biofuel feed...
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PMID: 21141187
PDF is available here.
Abstract
We conceptually integrate the role of aboveground-belowground linkages with the principles of restoration ecology through a framework that transcends multiple levels of ecological organization, and illustrate its application through three examples: restoration of abandoned land, reversal of biologic...
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PMID: 20888063
PDF is available here.
Abstract
In this communication, we reported another unique IspG-catalyzed transformation, the production of its substrate, MEcPP, from (2R,3R)-4-hydroxy-3-methyl-2,3-epoxybutanyl diphosphate (Epoxy-HMBPP) when reductants are excluded from the reaction mixture.
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PMID: 20820543
PDF is available here.
Abstract
We then demonstrate how the application of these genomic tools to ecological model species means that we can start addressing some of the questions that have puzzled ecological geneticists for decades such as: How many genes are involved in adaptation? What types of genetic variation are responsible...
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PMID: 20952088
PDF is available here.
Abstract
We examine recent advances in phylogenetic comparative methods, techniques normally used to study adaptation over long periods, which allow them to be applied to the study of adaptation over shorter time scales. This increased applicability is largely due to the emergence of more flexible models of...
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PMID: 20961648
PDF is available here.
Annele Virtanen,
Jorma Joutsensaari,
Thomas Koop,
Jonna Kannosto,
Pasi Yli-Pirilä,
Jani Leskinen,
Jyrki M Mäkelä,
Jarmo K Holopainen,
Ulrich Pöschl,
Markku Kulmala,
Douglas R Worsnop and
Ari Laaksonen
Abstract
We present experimental evidence that they can be solid under ambient conditions. We investigated biogenic SOA particles formed from oxidation products of VOCs in plant chamber experiments and in boreal forests within a few hours after atmospheric nucleation events. On the basis of observed particle...
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PMID: 20944744
PDF is available here.
Abstract
MicroRNAs (miRNAs) are 21-23 nucleotide (nt) non-coding RNAs that play a key role in regulating the expression of protein-coding genes at post-transcriptional levels in plants and animals. MiRNA genes, which serve as genetic buffers and regulators, are primarily located in the intergenic regions of...
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PMID: 20691276
PDF is available here.
Abstract
We asked (1) how strongly is housing associated with the spatial distribution of invasive exotic plants compared to other anthropogenic and environmental factors; (2) what type of housing pattern is related to the richness of invasive exotic plants; and (3) do invasive plants represent ecological tr...
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PMID: 21049879
PDF is available here.