Advanced search×

AphanoDB: a genomic resource for Aphanomyces pathogens.

Madoui

BMC Genomics (2007) PMID 18096036 PMCID 2228315

The Oomycete genus Aphanomyces comprises devastating plant and animal pathogens. However, little is known about the molecular mechanisms underlying pathogenicity of Aphanomyces species. In this study, we report on the development of a public database called AphanoDB which is dedicated to Aphanomyces genomic data. As a first step, a large collection of Expressed Sequence Tags was obtained from the legume pathogen A. euteiches, which was then processed and collected into AphanoDB.

DOI: 10.1186/1471-2164-8-471
Version: za2963e q8zaa q8zba q8zcf q8zd8 q8ze3 q8zf1 q8zga
View PDF

Similar articles you may find interesting…

  1. Hypergraph covering problems motivated by genome assembly questions
    Cedric Chauve, Murray Patterson, and Ashok Rajaraman

    arXiv:1306.4353 [cs.DS] 18 Jun 2013

    We describe variants of the mC1P that address specific issues of genome Assembly, and polynomial time or fixed-parameter algorithms to solve them....
    View PDF
  2. Reconstructing Native American Migrations from Whole-genome and Whole-exome Data
    Simon Gravel, Fouad Zakharia, and Carlos D Bustamante

    arXiv:1306.4021 [q-bio.PE] 17 Jun 2013

    We wish to understand when different Regions of the continent were inhabited, where settlers came from, and how Current inhabitants relate genetically to earlier populations. Recent studies Unraveled parts of the genetic history of the continent using genotyping arrays And uniparental markers. The 1...
    View PDF
  3. Hybrid Indexes for Repetitive Datasets
    H Ferrada, T Gagie, and S J Puglisi

    arXiv:1306.4037 [cs.DS] 17 Jun 2013

    We introduce a simple technique for reducing The size of conventional indexes on such highly repetitive texts. Given upper Bounds on pattern lengths and edit distances, we preprocess the text with LZ77 To obtain a filtered text, for which we store a conventional index. Later, Given a query, we find...
    View PDF